| Applicant | Comment Close Date | Application Number | Publication Date | Waterway/Nearest Community |
| Jackson County Board of Supervisors | 28 July 2006 | SAM-2006-1160-HWL.pdf | 26 June 2006 | Moungers Creek, Jackson County, Mississippi |
| Mr. Jimmy Grantham | 23 July 2006 | SAM-2006-1661-JBE.pdf | 23 June 2006 | Summerdale, Baldwin County, Alabama |
| The Fish Camps on Dog River | 28 July 2006 | SAM-2006-621-MBM.pdf | 28 June 2006 | Mouth of Dog River, Mobile County, Alabama |
| The Gates of Fowl River, L.L.C. | 28 July 2006 | SAM-2006-1434-MBM.pdf | 28 June 2006 | East Fowl River, Theodore, Mobile County, Alabama |
| Erik Lowrey | 24 July 2006 | SAM-2006-870-HWL.pdf | 23 June 2006 | Petal, Forrest County, Mississippi |
| City of Biloxi | 23 July 2006 | SAM-2006-732-JAM.pdf | 23 June 2006 | Small Craft Harbor Basin, Mississippi Sound, Biloxi, Harrison County. |
| Colonial Properties Trust | 21 July 2006 | SAM-2006-597-LCS.pdf | 21 June 2006 | Tributary to Brights Creek, Baldwin County, Alabama |
| City of Biloxi | 7 July 2006 | SAM-2006-740-DJS.pdf | 7 June 2006 | Back Bay of Biloxi, Biloxi, Harrison County, Mississippi |
| Alter Scrap Processing | 10 July 2006 | SAM-2006-1368-MNS.pdf | 9 June 2006 | Tributary to Mobile River, Mobile County, Alabama |
| Wal Mart Stores East, LP | 14 July 2006 | SAM-2006-1390-MNS.pdf | 14 June 2006 | Luxapilla Creek, Winfield, Marion County, Alabama |
| Mobile County Commission | 10 July 2006 | SAM-2006-1418-MNS.pdf | 22 June 2006 | Halls Mill Creek, Mobile County, Alabama |
| McConnell Wright, LLC | 11 July 2006 | SAM-2006-1419-MNS.pdf | 22 June 2006 | Powell Creek, Escatawpa River, Earlville, Mobile County, Alabama |
| Aloe Bay Marina, LLC | 8 July 2006 | SAM-2006-1336-JBE.pdf | 8 June 2006 | Aloe Bay, Dauphin Island, Mobile County, Alabama |
| USS Real Estate | 6 July 2006 | SAM-2006-01331-MNS.pdf | 6 June 2006 | Hogpen Branch, Cahaba River, Leeds, Jefferson County, Alabama |
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